WGS of M. chelonae isolated from a human (Homo sapiens) - SRA

SRX2245658: WGS of M. chelonae isolated from a human (Homo sapiens)
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 835.7M bases, 491.1Mb downloads

Design: Approximately 15-28 ng/킠 of DNA was submitted from each sample to the Georgia Genomics Facility (The University of Georgia, Athens, GA) for DNA library preparation using Illumina TruSeq adaptors. Paired end (PE) 300-base reads were generated on an Illumina MiSeq PE300 sequencer (Illumina Inc., San Diego, CA).

Submitted by: University of Georgia

Study: Mycobacterium Genome sequencing and assembly

PRJNA347845 • SRP091566 • All experiments • All runs

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Thirty previously identified M. chelonae clinical isolates cultured from biofilms, fish, reptiles, mammals, including humans, and three ATCC reference strains were evaluated. Core phylogenomic analysis, targeted gene comparisons, and in-vitro antimicrobial susceptibility patterns were assessed to elucidate a rapid and reliable method for species identification and understand the epidemiologic significance of the isolates

Sample:

SAMN05897991 • SRS1746191 • All experiments • All runs

Organism: Mycobacteroides chelonae

Library:

Name: 1558_H8

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 1.4M spots, 835.7M bases, 491.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR4423493	1,390,675	835.7M	491.1Mb	2016-10-19

ID:: 3295204

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